We are a strong advocate for Open and Collaborative Science. We have tried to provide the PDF files for all our papers on ResearchGate. If you can't access any of them, please do let me know!

Check our Curriculum Vitae and Google Scholar profile. 

• Constructing Biologically Constrained RNNs via Dale's Backprop and Topologically-Informed Pruning
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Balwani A, Wang AQ, Najafi F, Choi H

2025; BioRxiv; DOI: https://doi.org/10.1101/2025.01.09.632231

• Spike Reliability is Cell-Type Specific and Shapes Excitation and Inhibition in the Cortex.
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Russo S, Stanley GB, Najafi F

2025; Scientific Reports; PMID: 39747147

• Unexpected events modulate task-independent signaling in VIP and excitatory cells of the visual cortex.
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Najafi F*, Russo S, Lecoq J*

2024; iScience (accepted); DOI: 10.1101/2024.05.15.594366 * co-corresponding author

• Stimulus novelty uncovers coding diversity in visual cortical circuits.
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Garrett M*, Groblewski P*, Piet A*, Ollerenshaw D*, Najafi F*, Yavorska I*, ..., , Zeng H, Philips J, Mihalas S, Arkhipov A, Koch C, Olsen S

2023; bioRxiv; DOI: 10.1101/2023.02.14.528085 * co-first author

• Allen Brain Observatory: Visual Behavior 2P: Technical Whitepaper
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    2022; Allen Institute: MindScope

• Excitatory and Inhibitory Subnetworks Are Equally Selective during Decision-Making and Emerge Simultaneously during Learning.
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Najafi F, Elsayed GF, Cao R, Pnevmatikakis E, Latham PE, Cunningham JP, Churchland AK 

2020; Neuron; PMID: 31753580

• Bidirectional short-term plasticity during single-trial learning of cerebellar-driven eyelid movements in mice.
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Najafi F, Medina JF 

2020; Neurobiology of Learning and Memory; PMID: 31610225

• CaImAn an open source tool for scalable calcium imaging data analysis.
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Giovannucci A, Friedrich J, Gunn P, Kalfon J, Koay SU, Taxidis J, Najafi F, Gauthier JL, Zhou P, Tank DW, Chklovskii DB, Pnevmatikakis E 

2019; eLife; PMID: 30652683

• Perceptual Decision-Making: A Field in the Midst of a Transformation.
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Najafi F, Churchland AK

2018; Neuron; PMID: 30359608

• Cerebellar granule cells acquire a widespread predictive feedback signal during motor learning.
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Giovannucci A, Badura A, Deverett B, Najafi F, Pereira TD, Gao Z, Ozden I, Kloth AD, Pnevmatikakis E, Paninski L, De Zeeuw CI, Medina JF, Wang SS

2017; Nature Neuroscience; PMID: 28319608

• Sensory-driven enhancement of calcium signals in individual Purkinje cell dendrites of awake mice.
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Najafi F*, Giovannucci A*, Wang SSH, Medina JF 

2014; Cell Reports; PMID: 24582958

• Coding of stimulus strength via analog calcium signals in Purkinje cell dendrites of awake mice.
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Najafi F, Giovannucci A, Wang SSH, Medina JF 

2014; eLife; PMID: 25205669

• Beyond "all-or-nothing" climbing fibers: graded representation of teaching signals in Purkinje cells.
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Najafi F, Medina JF

2013; Frontiers in Neural Circuits; PMID: 23847473